PUBLICATIONS

MOST SIGNIFICATIVE PUBLICATIONS

MILANI, C., ALESSANDRI, G., MANGIFESTA, M., MANCABELLI, L., LUGLI, G.A., FONTANA, F., LONGHI, G., ANZALONE, R., VIAPPIANI, A., DURANTI, S., TURRONI, F., COSTI, R., ANNICCHIARICO, A., MORINI, A., SARLI, L., OSSIPRANDI, M.C., VAN SINDEREN, D., VENTURA, M. 2020.

UNTANGLING SPECIES-LEVEL COMPOSITION OF COMPLEX BACTERIAL COMMUNITIES THROUGH A NOVEL METAGENOMIC APPROACH.

MSYSTEMS, 5(4), E00404-20

MILANI, C., DURANTI, S., NAPOLI, S., ALESSANDRI, G., MANCABELLI, L., ANZALONE, R., LONGHI, G., VIAPPIANI, A., MANGIFESTA, M., LUGLI, G.A., BERNASCONI, S., OSSIPRANDI, M.C., VAN SINDEREN, D., VENTURA, M., TURRONI, F. 2019.

COLONIZATION OF THE HUMAN GUT BY BOVINE BACTERIA PRESENT IN PARMESAN CHEESE.

NATURE COMMUNICATIONS, 10(1), 1286

LUGLI, G.A., MILANI, C., DURANTI, S., ALESSANDRI, G., TURRONI, F., MANCABELLI, L., TATONI, D., OSSIPRANDI, M.C., VAN SINDEREN, D., VENTURA, M. 2019.

ISOLATION OF NOVEL GUT BIFIDOBACTERIA USING A COMBINATION OF METAGENOMIC AND CULTIVATION APPROACHES.

GENOME BIOLOGY, 20(1), 96

TICINESI, A., MILANI, C., GUERRA, A., ALLEGRI, F., LAURETANI, F., NOUVENNE, A., MANCABELLI, L., LUGLI, G.A., TURRONI, F., DURANTI, S., MANGIFESTA, M., VIAPPIANI, A., FERRARIO, C., DODI, R., DALL'ASTA, M., DEL RIO, D., VENTURA, M., MESCHI, T. 2018.

UNDERSTANDING THE GUT-KIDNEY AXIS IN NEPHROLITHIASIS: AN ANALYSIS OF THE GUT MICROBIOTA COMPOSITION AND FUNCTIONALITY OF STONE FORMERS.

GUT

MILANI, C., CASEY, E., LUGLI, G.A., MOORE, R., KACZOROWSKA, J., FEEHILY, C., MANGIFESTA, M., MANCABELLI, L., DURANTI, S., TURRONI, F., BOTTACINI, F., MAHONY, J., COTTER, P.D., MCAULIFFE, F.M., VAN SINDEREN, D., VENTURA, M. 2018.

TRACING MOTHER-INFANT TRANSMISSION OF BACTERIOPHAGES BY MEANS OF A NOVEL ANALYTICAL TOOL FOR SHOTGUN METAGENOMIC DATASETS: METANNOTATORX.

MICROBIOME, 6(1), 145

TURRONI, F., MILANI, C., DURANTI, S., MAHONY, J., VAN SINDEREN, D., VENTURA, M. 2018.

GLYCAN UTILIZATION AND CROSS-FEEDING ACTIVITIES BY BIFIDOBACTERIA.

TRENDS IN MICROBIOLOGY, 26(4), PP. 339-350

LUGLI, G.A., MILANI, C., MANCABELLI, L., TURRONI, F., FERRARIO, C., DURANTI, S., SINDEREN, D., VENTURA, M. 2017.

ANCIENT BACTERIA OF THE ÖTZI'S MICROBIOME: A GENOMIC TALE FROM THE COPPER AGE.

MICROBIOME, 5(1), 5

DURANTI, S., LUGLI, G.A., MANCABELLI, L., ARMANINI, F., TURRONI, F., JAMES, K., FERRETTI, P., GORFER, V., FERRARIO, C., MILANI, C., MANGIFESTA, M., ANZALONE, R., ZOLFO, M., VIAPPIANI, A., PASOLLI, E., BARILETTI, I., CANTO, R., CLEMENTI, R., COLOGNA, M., CRIFÒ, T., CUSUMANO, G., FEDI, S., GOTTARDI, S., INNAMORATI, C., MASÈ, C., POSTAI, D., SAVOI, D., SOFFIATI, M., TATEO, S., PEDROTTI, A., SEGATA, N., VAN SINDEREN, D., VENTURA, M. 2017.

MATERNAL INHERITANCE OF BIFIDOBACTERIAL COMMUNITIES AND BIFIDOPHAGES IN INFANTS THROUGH VERTICAL TRANSMISSION.

MICROBIOME, 5(1), 66

MILANI, C., DURANTI, S., BOTTACINI, F., CASEY, E., TURRONI, F., MAHONY, J., BELZER, C., PALACIO, S.D., MONTES, S.A., MANCABELLI, L.A, LUGLI, G.A., RODRIGUEZ, J.M., BODE, L., DE VOS, W., GUEIMONDE, M., MARGOLLES, A., VAN SINDEREN, D., VENTURA, M. 2017.

THE FIRST MICROBIAL COLONIZERS OF THE HUMAN GUT: COMPOSITION, ACTIVITIES, AND HEALTH IMPLICATIONS OF THE INFANT GUT MICROBIOTA.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 81(4), E00036

MILANI, C., MANGIFESTA, M., MANCABELLI, LA, LUGLI, G.A., JAMES, K., DURANTI, S., TURRONI, FA, FERRARIO, C., OSSIPRANDI, M.C., VAN SINDEREN, D., VENTURA, M. 2017.

UNVEILING BIFIDOBACTERIAL BIOGEOGRAPHY ACROSS THE MAMMALIAN BRANCH OF THE TREE OF LIFE.

ISME JOURNAL, 11(12), PP. 2834-2847

TURRONI, F., MILANI, C., DURANTI, S., MANCABELLI, L., MANGIFESTA, M., VIAPPIANI, A., LUGLI, G.A., FERRARIO, C., GIOIOSA, L., FERRARINI, A.E, LI, J., PALANZA, P., DELLEDONNE, M., VAN SINDEREN, D., VENTURA, M. 2016.

DECIPHERING BIFIDOBACTERIAL-MEDIATED METABOLIC INTERACTIONS AND THEIR IMPACT ON GUT MICROBIOTA BY A MULTI-OMICS APPROACH.

ISME JOURNAL, 10(7), PP. 1656-1668

MILANI, C., LUGLI, G., TURRONI, F., MANCABELLI, L., DURANTI, S., VIAPPIANI, A., MANGIFESTA, M., SEGATA, N., VAN SINDEREN, D., AND VENTURA, M. 2014.

EVALUATION OF BIFIDOBACTERIAL COMMUNITY COMPOSITION IN THE HUMAN GUT BY MEANS OF A TARGETED AMPLICON SEQUENCING (ITS) PROTOCOL.

FEMS MICROBIOLOGY ECOLOGY.

MILANI, C., LUGLI, G.A., DURANTI, S., TURRONI, F., BOTTACINI, F., MANGIFESTA, M., SANCHEZ, B., VIAPPIANI, A., MANCABELLI, L., TAMINIAU, B., DELCENSERIE, V., BARRANGOU, R., MARGOLLES, A., VAN SINDEREN, D., AND VENTURA, M. 2014.

GENOME ENCYCLOPAEDIA OF TYPE STRAINS OF THE GENUS BIFIDOBACTERIUM.

APPL. ENVIRON. MICROBIOL. 80(20):6290-302

TURRONI, F., SERAFINI, F., FORONI, E., DURANTI, S., O’CONNELL MOTHERWAY, M., TAVERNITI, V., MANGIFESTA, M., MILANI, C., VIAPPIANI, A., ROVERSI, T., SÁNCHEZ, B., SANTONI, A., GIOIOSA, L., FERRARINI, A., DELLEDONNE, M., MARGOLLES, A., PIAZZA, L., PALANZA, P., BOLCHI, A., GUGLIELMETTI, S., VAN SINDEREN D., AND VENTURA, M. 2013.

THE ROLE OF SORTASE-DEPENDENT PILI OF BIFIDOBACTERIUM BIFIDUM PRL2010 IN MODULATING BACTERIUM-HOST INTERACTIONS.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (PNAS). 110(27):11151-6.

MILANI, M., HEVIA, A., FORONI, E., DURANTI, S., TURRONI, F., LUGLI, G.A., SANCHEZ, B., MARTÍN, R., GUEIMONDE, M., VAN SINDEREN, D., MARGOLLES, A., AND VENTURA, M. 2013.

ASSESSING THE FECAL MICROBIOTA: AN OPTIMIZED ION TORRENT 16S RRNA GENE-BASED ANALYSIS PROTOCOL.

PLOS ONE. 8(7):E68739.

TURRONI, F., VENTURA, M., BUTTÓ, L.F., DURANTI, S., O’TOOLE, P.W.,  O’CONNELL MOTHERWAY, M., AND VAN SINDEREN, D. 2013.

MOLECULAR DIALOGUE BETWEEN THE HUMAN GUT MICROBIOTA AND THE HOST: A LACTOBACILLUS AND BIFIDOBACTERIUM PERSPECTIVE.

CELLULAR AND MOLECULAR LIFE SCIENCES.

BOTTACINI, F., MILANI, C., TURRONI, F., SÁNCHEZ, B., FORONI, E., DURANTI, S., SERAFINI, F., VIAPPIANI, A., STRATI, F., FERRARINI, A., DELLEDONNE, M., HENRISSAT, B.,  COUTINHO, P., FITZGERALD, G.F., MARGOLLES, A., VAN SINDEREN, D., AND VENTURA, M. 2012.

BIFIDOBACTERIUM ASTEROIDES PRL2011 GENOME ANALYSIS REVEALS CLUES FOR COLONIZATION OF THE INSECT GUT.

PLOS ONE 7(9):E44229.

VENTURA, M., TURRONI, F., O’CONNELL MOTHERWAY, M., MACSHARRY, J., AND VAN SINDEREN, D. 2012.

HOST-MICROBE INTERACTIONS THAT FACILITATE GUT COLONIZATION BY COMMENSAL BIFIDOBACTERIA.

TRENDS IN MICROBIOLOGY 20(10):467-476.

FORONI, E., SERAFINI, F., AMIDANI, D., TURRONI, F., HE, F., BOTTACINI, F., O'CONNELL MOTHERWAY, M., VIAPPIANI, A., ZHANG, Z., RIVETTI, C., VAN SINDEREN, D. AND VENTURA, M. 2011.

GENETIC ANALYSIS AND MORPHOLOGICAL IDENTIFICATION OF PILUS-LIKE STRUCTURES IN MEMBERS OF THE GENUS BIFIDOBACTERIUM.

MICROBIAL CELL FACTORIES 10 SUPPL 1:S16.

BOTTACINI, F., DAL BELLO, F., TURRONI, F., MILANI, C., DURANTI, S., FORONI, E., VIAPPIANI, A., STRATI, F., MORA, D., VAN SINDEREN, D., AND VENTURA, M. 2011.

COMPLETE GENOME SEQUENCE OF BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS BLC1.

J. BACTERIOL. 193(22):6387-8.

TURRONI, F., MILANI, C., VAN SINDEREN, D., AND VENTURA, M. 2011.

GENETIC STRATEGIES FOR MUCIN METABOLISM IN BIFIDOBACTERIUM BIFIDUM PRL2010: AN EXAMPLE OF POSSIBLE HUMAN-MICROBE CO-EVOLUTION.

GUT MICROBES 2(3):183-9.

TURRONI, F., BOTTACINI, F., FORONI, E., MULDER, I., KIM, J.H., ZOMER, A., SÁNCHEZ, B., BIDOSSI, A., FERRARINI, A., GIUBELLINI, V., DELLEDONNE, M., HENRISSAT, B., COUTINHO, P., OGGIONI, M., FITZGERALD, G.F., MILLS, D., MARGOLLES, A., KELLY, D., VAN SINDEREN, D., AND VENTURA, M. 2010.

GENOME ANALYSIS OF BIFIDOBACTERIUM BIFIDUM PRL2010 REVEALS METABOLIC PATHWAYS FOR HOST-DERIVED GLYCAN FORAGING.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (PNAS) 107(45):19514-9.

VENTURA M., TURRONI F., ZOMER A., FORONI E., GIUBELLINI V., CANCHAYA C., BOTTACINI F., CLAESSON, M.J., ZHANG, Z., MANTZOURANI, M., MULAS L., FERRARINI A., DELLEDONNE M., HENRISSAT B., COUTINHO, P., OGGIONI M., GUPTA R.S., BEIGHTON D., FITZGERALD G.F., O'TOOLE, P.W., AND VAN SINDEREN D.,. 2009.

THE BIFIDOBACTERIUM DENTIUM BD1 GENOME SEQUENCE REFLECTS ITS GENETIC ADAPTATION TO THE HUMAN ORAL CAVITY.

PLOS GENETICS 12: E1000785.

TURRONI F, MARCHESI, J.R., FORONI E, GUEIMONDE, M., SHANAHAN F, MARGOLLES, A., VAN SINDEREN D, VENTURA M. 2009.

MICROBIOMIC ANALYSIS OF THE BIFIDOBACTERIAL POPULATION IN THE HUMAN DISTAL GUT.

THE ISME J. 3(6):745-51.

VENTURA, M., O'FLAHERTY S., CLAESSON M.J., TURRONI F, KLAENHAMMER T. R., VAN SINDEREN D., AND O'TOOLE P. W. 2009.

GENOME-SCALE ANALYSES OF HEALTH-PROMOTING BACTERIA: PROBIOGENOMICS.

NATURE MICROBIOL. REV 7(1):61-71.

VENTURA, M., CANCHAYA, C., TAUCH. A, CHANDRA G., CHATER, K., FITZGERALD, G.F., AND VAN SINDEREN, D. 2007.

GENOMICS OF ACTINOBACTERIA: TRACING THE EVOLUTIONARY HISTORY OF AN ANCIENT PHYLUM.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS 71: 495-548.